Detailed information of SNP:
|
SNP ID:
sf0412546198(Gbrowse)
Chromosome: chr04 Position: 12546198 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1387 | 93.44% | 6.56% |
| All Indica | 772 | 90.54% | 9.46% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 63 | 77.78% | 22.22% |
| Indica I | 359 | 89.42% | 10.58% |
| Indica II | 209 | 95.69% | 4.31% |
| Indica Intermediate | 204 | 87.25% | 12.75% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412546198 | T->C | LOC_Os04g22160(LOC_Os04g22160.1) | Synonymous |