Detailed information of SNP:
|
SNP ID:
sf0412561202(Gbrowse)
Chromosome: chr04 Position: 12561202 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 95.59% | 4.41% |
| All Indica | 787 | 92.63% | 7.37% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 370 | 96.76% | 3.24% |
| Indica II | 207 | 86.47% | 13.53% |
| Indica Intermediate | 210 | 91.43% | 8.57% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412561202 | G->A | LOC_Os04g22190(LOC_Os04g22190.1) | Synonymous |