Detailed information of SNP:
|
SNP ID:
sf0412566043(Gbrowse)
Chromosome: chr04 Position: 12566043 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 93.70% | 6.30% |
| All Indica | 784 | 99.49% | 0.51% |
| All Japonica | 490 | 84.29% | 15.71% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 100.00% | 0.00% |
| Indica II | 206 | 98.54% | 1.46% |
| Indica Intermediate | 207 | 99.52% | 0.48% |
| Temperate Japonica | 330 | 97.27% | 2.73% |
| Tropical Japonica | 93 | 36.56% | 63.44% |
| Japonica Intermediate | 67 | 86.57% | 13.43% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412566043 | G->A | LOC_Os04g22200(LOC_Os04g22200.1) | Synonymous |