Detailed information of SNP:
|
SNP ID:
sf0412615355(Gbrowse)
Chromosome: chr04 Position: 12615355 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1324 | 84.52% | 15.48% |
| All Indica | 710 | 75.07% | 24.93% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 64 | 70.31% | 29.69% |
| Indica I | 339 | 82.30% | 17.70% |
| Indica II | 192 | 74.48% | 25.52% |
| Indica Intermediate | 179 | 62.01% | 37.99% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412615355 | C->G | INTERGENIC | None |