Detailed information of SNP:
|
SNP ID:
sf0412679034(Gbrowse)
Chromosome: chr04 Position: 12679034 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1343 | 90.92% | 9.08% |
| All Indica | 729 | 84.77% | 15.23% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 349 | 87.39% | 12.61% |
| Indica II | 193 | 87.05% | 12.95% |
| Indica Intermediate | 187 | 77.54% | 22.46% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412679034 | T->C | LOC_Os04g22400(LOC_Os04g22400.1) | Synonymous |