Detailed information of SNP:
|
SNP ID:
sf0412691716(Gbrowse)
Chromosome: chr04 Position: 12691716 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 90.48% | 9.52% |
| All Indica | 798 | 89.10% | 10.90% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 69.34% | 30.66% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412691716 | G->A | LOC_Os04g22430(LOC_Os04g22430.1) | Synonymous |