Detailed information of SNP:
|
SNP ID:
sf0412692402(Gbrowse)
Chromosome: chr04 Position: 12692402 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 60.04% | 39.96% |
| All Indica | 799 | 89.24% | 10.76% |
| All Japonica | 497 | 9.66% | 90.34% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 74.65% | 25.35% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 8.06% | 91.94% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412692402 | T->A | INTERGENIC | None |