Detailed information of SNP:
|
SNP ID:
sf0412724688(Gbrowse)
Chromosome: chr04 Position: 12724688 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1369 | 94.81% | 5.19% |
| All Indica | 749 | 90.52% | 9.48% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 342 | 85.96% | 14.04% |
| Indica II | 206 | 99.03% | 0.97% |
| Indica Intermediate | 201 | 89.55% | 10.45% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412724688 | A->T | LOC_Os04g22490(LOC_Os04g22490.1) | Non-Synonymous SNP |