Detailed information of SNP:
|
SNP ID:
sf0412724736(Gbrowse)
Chromosome: chr04 Position: 12724736 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1356 | 93.44% | 6.56% |
| All Indica | 737 | 88.06% | 11.94% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 337 | 82.20% | 17.80% |
| Indica II | 202 | 98.51% | 1.49% |
| Indica Intermediate | 198 | 87.37% | 12.63% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412724736 | T->C | LOC_Os04g22490(LOC_Os04g22490.1) | Synonymous |