Detailed information of SNP:
|
SNP ID:
sf0412726362(Gbrowse)
Chromosome: chr04 Position: 12726362 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1391 | 95.04% | 4.96% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 470 | 87.45% | 12.55% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 325 | 99.38% | 0.62% |
| Tropical Japonica | 83 | 39.76% | 60.24% |
| Japonica Intermediate | 62 | 88.71% | 11.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412726362 | A->C | LOC_Os04g22490(LOC_Os04g22490.1) | SNPs that introduce stop codons |