Detailed information of SNP:
|
SNP ID:
sf0412745106(Gbrowse)
Chromosome: chr04 Position: 12745106 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1240 | 97.42% | 2.58% |
| All Indica | 691 | 100.00% | 0.00% |
| All Japonica | 439 | 92.94% | 7.06% |
| Aus | 61 | 100.00% | 0.00% |
| Indica I | 322 | 100.00% | 0.00% |
| Indica II | 191 | 100.00% | 0.00% |
| Indica Intermediate | 178 | 100.00% | 0.00% |
| Temperate Japonica | 296 | 89.53% | 10.47% |
| Tropical Japonica | 82 | 100.00% | 0.00% |
| Japonica Intermediate | 61 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 97.14% | 2.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412745106 | C->G | INTERGENIC | None |