Detailed information of SNP:
|
SNP ID:
sf0412746095(Gbrowse)
Chromosome: chr04 Position: 12746095 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1374 | 76.27% | 23.73% |
| All Indica | 764 | 60.86% | 39.14% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 59 | 62.71% | 37.29% |
| Indica I | 358 | 59.50% | 40.50% |
| Indica II | 203 | 63.55% | 36.45% |
| Indica Intermediate | 203 | 60.59% | 39.41% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412746095 | G->T | INTERGENIC | None |