Detailed information of SNP:
|
SNP ID:
sf0412746099(Gbrowse)
Chromosome: chr04 Position: 12746099 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1371 | 76.44% | 23.56% |
| All Indica | 758 | 61.48% | 38.52% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 61 | 60.66% | 39.34% |
| Indica I | 353 | 61.19% | 38.81% |
| Indica II | 202 | 62.38% | 37.62% |
| Indica Intermediate | 203 | 61.08% | 38.92% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412746099 | A->T | INTERGENIC | None |