Detailed information of SNP:
|
SNP ID:
sf0412747034(Gbrowse)
Chromosome: chr04 Position: 12747034 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1380 | 78.12% | 21.88% |
| All Indica | 771 | 65.24% | 34.76% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 58 | 53.45% | 46.55% |
| Indica I | 360 | 66.94% | 33.06% |
| Indica II | 205 | 61.46% | 38.54% |
| Indica Intermediate | 206 | 66.02% | 33.98% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412747034 | A->T | INTERGENIC | None |