Detailed information of SNP:
|
SNP ID:
sf0412747905(Gbrowse)
Chromosome: chr04 Position: 12747905 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1356 | 81.05% | 18.95% |
| All Indica | 744 | 70.56% | 29.44% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 59 | 55.93% | 44.07% |
| Indica I | 350 | 72.29% | 27.71% |
| Indica II | 196 | 69.90% | 30.10% |
| Indica Intermediate | 198 | 68.18% | 31.82% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412747905 | G->A | INTERGENIC | None |