Detailed information of SNP:
|
SNP ID:
sf0412749665(Gbrowse)
Chromosome: chr04 Position: 12749665 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1351 | 88.08% | 11.92% |
| All Indica | 739 | 79.97% | 20.03% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 61 | 85.25% | 14.75% |
| Indica I | 350 | 83.71% | 16.29% |
| Indica II | 196 | 77.04% | 22.96% |
| Indica Intermediate | 193 | 76.17% | 23.83% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412749665 | G->A | INTERGENIC | None |