Detailed information of SNP:
|
SNP ID:
sf0412783481(Gbrowse)
Chromosome: chr04 Position: 12783481 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 98.30% | 1.70% |
| All Indica | 791 | 97.98% | 2.02% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 209 | 98.09% | 1.91% |
| Indica Intermediate | 207 | 97.10% | 2.90% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412783481 | A->T | INTERGENIC | None |