Detailed information of SNP:
|
SNP ID:
sf0412784705(Gbrowse)
Chromosome: chr04 Position: 12784705 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1222 | 66.04% | 33.96% |
| All Indica | 655 | 43.51% | 56.49% |
| All Japonica | 473 | 98.94% | 1.06% |
| Aus | 48 | 33.33% | 66.67% |
| Indica I | 303 | 45.54% | 54.46% |
| Indica II | 169 | 39.05% | 60.95% |
| Indica Intermediate | 183 | 44.26% | 55.74% |
| Temperate Japonica | 324 | 98.46% | 1.54% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 56 | 100.00% | 0.00% |
| Group VI/Aromatic | 11 | 90.91% | 9.09% |
| Intermediate | 35 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412784705 | A->C | INTERGENIC | None |