Detailed information of SNP:



SNP ID: sf0412784705(Gbrowse)

Chromosome: chr04

Position: 12784705
Major allele: A

Minor allele: C

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of C(minor allele)
All1222 66.04% 33.96%
All Indica655 43.51% 56.49%
All Japonica473 98.94% 1.06%
Aus48 33.33% 66.67%
Indica I303 45.54% 54.46%
Indica II169 39.05% 60.95%
Indica Intermediate183 44.26% 55.74%
Temperate Japonica324 98.46% 1.54%
Tropical Japonica93 100.00% 0.00%
Japonica Intermediate56 100.00% 0.00%
Group VI/Aromatic11 90.91% 9.09%
Intermediate35 80.00% 20.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0412784705 A->C INTERGENIC None