Detailed information of SNP:
|
SNP ID:
sf0412810941(Gbrowse)
Chromosome: chr04 Position: 12810941 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1389 | 82.15% | 17.85% |
| All Indica | 778 | 70.44% | 29.56% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 60 | 80.00% | 20.00% |
| Indica I | 366 | 66.12% | 33.88% |
| Indica II | 207 | 71.98% | 28.02% |
| Indica Intermediate | 205 | 76.59% | 23.41% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412810941 | T->C | LOC_Os04g22630(LOC_Os04g22630.1) | INTRON |