Detailed information of SNP:
|
SNP ID:
sf0412891156(Gbrowse)
Chromosome: chr04 Position: 12891156 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1398 | 95.14% | 4.86% |
| All Indica | 779 | 92.17% | 7.83% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 366 | 91.53% | 8.47% |
| Indica II | 208 | 98.56% | 1.44% |
| Indica Intermediate | 205 | 86.83% | 13.17% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412891156 | T->C | INTERGENIC | None |