Detailed information of SNP:
|
SNP ID:
sf0412894218(Gbrowse)
Chromosome: chr04 Position: 12894218 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1390 | 77.70% | 22.30% |
| All Indica | 780 | 91.03% | 8.97% |
| All Japonica | 490 | 57.76% | 42.24% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 371 | 91.64% | 8.36% |
| Indica II | 201 | 89.05% | 10.95% |
| Indica Intermediate | 208 | 91.83% | 8.17% |
| Temperate Japonica | 333 | 77.48% | 22.52% |
| Tropical Japonica | 93 | 4.30% | 95.70% |
| Japonica Intermediate | 64 | 32.81% | 67.19% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412894218 | T->C | LOC_Os04g22790(LOC_Os04g22790.1) | INTRON |