Detailed information of SNP:
|
SNP ID:
sf0412898995(Gbrowse)
Chromosome: chr04 Position: 12898995 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 50.96% | 49.04% |
| All Indica | 794 | 79.47% | 20.53% |
| All Japonica | 497 | 2.82% | 97.18% |
| Aus | 66 | 80.30% | 19.70% |
| Indica I | 373 | 82.04% | 17.96% |
| Indica II | 210 | 72.86% | 27.14% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412898995 | G->T | INTERGENIC | None |