Detailed information of SNP:



SNP ID: sf0412898995(Gbrowse)

Chromosome: chr04

Position: 12898995
Major allele: G

Minor allele: T

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of T(minor allele)
All1413 50.96% 49.04%
All Indica794 79.47% 20.53%
All Japonica497 2.82% 97.18%
Aus66 80.30% 19.70%
Indica I373 82.04% 17.96%
Indica II210 72.86% 27.14%
Indica Intermediate211 81.52% 18.48%
Temperate Japonica335 3.58% 96.42%
Tropical Japonica94 1.06% 98.94%
Japonica Intermediate68 1.47% 98.53%
Group VI/Aromatic14 28.57% 71.43%
Intermediate42 42.86% 57.14%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0412898995 G->T INTERGENIC None