Detailed information of SNP:
|
SNP ID:
sf0412902168(Gbrowse)
Chromosome: chr04 Position: 12902168 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 94.67% | 5.33% |
| All Indica | 794 | 96.22% | 3.78% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 62 | 27.42% | 72.58% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 207 | 94.69% | 5.31% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412902168 | T->C | INTERGENIC | None |