Detailed information of SNP:
|
SNP ID:
sf0412905685(Gbrowse)
Chromosome: chr04 Position: 12905685 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 61.71% | 38.29% |
| All Indica | 795 | 96.23% | 3.77% |
| All Japonica | 497 | 3.42% | 96.58% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 373 | 97.05% | 2.95% |
| Indica II | 211 | 91.47% | 8.53% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 4.48% | 95.52% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412905685 | T->C | INTERGENIC | None |