Detailed information of SNP:
|
SNP ID:
sf0412907342(Gbrowse)
Chromosome: chr04 Position: 12907342 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 62.12% | 37.88% |
| All Indica | 796 | 96.73% | 3.27% |
| All Japonica | 497 | 3.62% | 96.38% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 373 | 98.39% | 1.61% |
| Indica II | 212 | 91.98% | 8.02% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412907342 | C->A | LOC_Os04g22800(LOC_Os04g22800.1) | INTRON |