Detailed information of SNP:
|
SNP ID:
sf0412914567(Gbrowse)
Chromosome: chr04 Position: 12914567 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1391 | 97.34% | 2.66% |
| All Indica | 772 | 95.85% | 4.15% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 360 | 96.39% | 3.61% |
| Indica II | 208 | 98.56% | 1.44% |
| Indica Intermediate | 204 | 92.16% | 7.84% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412914567 | G->A | LOC_Os04g22810(LOC_Os04g22810.1) | Non-Synonymous SNP |