Detailed information of SNP:
|
SNP ID:
sf0412919878(Gbrowse)
Chromosome: chr04 Position: 12919878 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 56.77% | 43.23% |
| All Indica | 786 | 89.57% | 10.43% |
| All Japonica | 496 | 1.81% | 98.19% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 364 | 90.66% | 9.34% |
| Indica II | 212 | 86.79% | 13.21% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 334 | 2.40% | 97.60% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412919878 | A->G | LOC_Os04g22830(LOC_Os04g22830.1) | Synonymous |