Detailed information of SNP:
|
SNP ID:
sf0412940065(Gbrowse)
Chromosome: chr04 Position: 12940065 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1340 | 74.63% | 25.37% |
| All Indica | 736 | 62.50% | 37.50% |
| All Japonica | 494 | 92.51% | 7.49% |
| Aus | 56 | 64.29% | 35.71% |
| Indica I | 346 | 59.54% | 40.46% |
| Indica II | 193 | 67.36% | 32.64% |
| Indica Intermediate | 197 | 62.94% | 37.06% |
| Temperate Japonica | 332 | 94.58% | 5.42% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0412940065 | A->G | LOC_Os04g22850(LOC_Os04g22850.1) | Synonymous |