Detailed information of SNP:
|
SNP ID:
sf0413003176(Gbrowse)
Chromosome: chr04 Position: 13003176 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 92.85% | 7.15% |
| All Indica | 797 | 98.37% | 1.63% |
| All Japonica | 493 | 97.36% | 2.64% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 331 | 96.68% | 3.32% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413003176 | T->C | LOC_Os04g22920(LOC_Os04g22920.1) | Non-Synonymous SNP |