Detailed information of SNP:
|
SNP ID:
sf0413025092(Gbrowse)
Chromosome: chr04 Position: 13025092 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1353 | 89.95% | 10.05% |
| All Indica | 733 | 81.58% | 18.42% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 326 | 69.94% | 30.06% |
| Indica II | 202 | 87.62% | 12.38% |
| Indica Intermediate | 205 | 94.15% | 5.85% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413025092 | G->A | LOC_Os04g22970(LOC_Os04g22970.1) | Non-Synonymous SNP |