Detailed information of SNP:
|
SNP ID:
sf0413084326(Gbrowse)
Chromosome: chr04 Position: 13084326 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1336 | 50.45% | 49.55% |
| All Indica | 756 | 24.07% | 75.93% |
| All Japonica | 474 | 93.25% | 6.75% |
| Aus | 53 | 33.96% | 66.04% |
| Indica I | 362 | 34.53% | 65.47% |
| Indica II | 201 | 14.43% | 85.57% |
| Indica Intermediate | 193 | 14.51% | 85.49% |
| Temperate Japonica | 325 | 92.00% | 8.00% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 57 | 89.47% | 10.53% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413084326 | T->C | INTERGENIC | None |