Detailed information of SNP:
|
SNP ID:
sf0413086501(Gbrowse)
Chromosome: chr04 Position: 13086501 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1378 | 50.36% | 49.64% |
| All Indica | 773 | 20.70% | 79.30% |
| All Japonica | 497 | 93.16% | 6.84% |
| Aus | 55 | 65.45% | 34.55% |
| Indica I | 367 | 28.61% | 71.39% |
| Indica II | 205 | 18.54% | 81.46% |
| Indica Intermediate | 201 | 8.46% | 91.54% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413086501 | A->G | INTERGENIC | None |