Detailed information of SNP:
|
SNP ID:
sf0413099257(Gbrowse)
Chromosome: chr04 Position: 13099257 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1342 | 70.27% | 29.73% |
| All Indica | 736 | 51.90% | 48.10% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 57 | 42.11% | 57.89% |
| Indica I | 348 | 51.72% | 48.28% |
| Indica II | 196 | 47.45% | 52.55% |
| Indica Intermediate | 192 | 56.77% | 43.23% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413099257 | G->A | LOC_Os04g23070(LOC_Os04g23070.1) | Synonymous |