Detailed information of SNP:
|
SNP ID:
sf0413168063(Gbrowse)
Chromosome: chr04 Position: 13168063 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1368 | 98.25% | 1.75% |
| All Indica | 791 | 100.00% | 0.00% |
| All Japonica | 456 | 94.74% | 5.26% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 100.00% | 0.00% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 312 | 92.31% | 7.69% |
| Tropical Japonica | 82 | 100.00% | 0.00% |
| Japonica Intermediate | 62 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413168063 | A->G | LOC_Os04g23180(LOC_Os04g23180.1) | INTRON |