Detailed information of SNP:
|
SNP ID:
sf0413251115(Gbrowse)
Chromosome: chr04 Position: 13251115 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 89.20% | 10.80% |
| All Indica | 796 | 97.49% | 2.51% |
| All Japonica | 490 | 75.31% | 24.69% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 329 | 88.15% | 11.85% |
| Tropical Japonica | 93 | 21.51% | 78.49% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413251115 | C->T | LOC_Os04g23240(LOC_Os04g23240.1) | Synonymous |