Detailed information of SNP:
|
SNP ID:
sf0413251179(Gbrowse)
Chromosome: chr04 Position: 13251179 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 56.70% | 43.30% |
| All Indica | 795 | 69.94% | 30.06% |
| All Japonica | 493 | 30.83% | 69.17% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 59.36% | 40.64% |
| Indica II | 211 | 67.30% | 32.70% |
| Indica Intermediate | 210 | 91.43% | 8.57% |
| Temperate Japonica | 333 | 19.22% | 80.78% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 66 | 22.73% | 77.27% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413251179 | A->G | LOC_Os04g23240(LOC_Os04g23240.1) | Non-Synonymous SNP |