Detailed information of SNP:
|
SNP ID:
sf0413253107(Gbrowse)
Chromosome: chr04 Position: 13253107 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1387 | 88.10% | 11.90% |
| All Indica | 794 | 98.36% | 1.64% |
| All Japonica | 478 | 78.03% | 21.97% |
| Aus | 62 | 38.71% | 61.29% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 210 | 95.24% | 4.76% |
| Indica Intermediate | 209 | 98.56% | 1.44% |
| Temperate Japonica | 328 | 86.89% | 13.11% |
| Tropical Japonica | 83 | 37.35% | 62.65% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413253107 | C->T | LOC_Os04g23240(LOC_Os04g23240.1) | Non-Synonymous SNP |