Detailed information of SNP:
|
SNP ID:
sf0413266886(Gbrowse)
Chromosome: chr04 Position: 13266886 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 54.31% | 45.69% |
| All Indica | 797 | 76.41% | 23.59% |
| All Japonica | 484 | 12.40% | 87.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 59.47% | 40.53% |
| Indica II | 211 | 91.00% | 9.00% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 332 | 15.96% | 84.04% |
| Tropical Japonica | 85 | 1.18% | 98.82% |
| Japonica Intermediate | 67 | 8.96% | 91.04% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413266886 | A->G | INTERGENIC | None |