Detailed information of SNP:
|
SNP ID:
sf0413272360(Gbrowse)
Chromosome: chr04 Position: 13272360 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 87.38% | 12.62% |
| All Indica | 798 | 91.35% | 8.65% |
| All Japonica | 497 | 80.89% | 19.11% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 213 | 74.65% | 25.35% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413272360 | A->G | INTERGENIC | None |