Detailed information of SNP:
|
SNP ID:
sf0413286485(Gbrowse)
Chromosome: chr04 Position: 13286485 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1353 | 92.90% | 7.10% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 435 | 79.31% | 20.69% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 280 | 70.71% | 29.29% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 62 | 87.10% | 12.90% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413286485 | A->G | INTERGENIC | None |