Detailed information of SNP:
|
SNP ID:
sf0413288038(Gbrowse)
Chromosome: chr04 Position: 13288038 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 98.78% | 1.22% |
| All Indica | 798 | 99.37% | 0.63% |
| All Japonica | 473 | 97.46% | 2.54% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 329 | 98.48% | 1.52% |
| Tropical Japonica | 78 | 92.31% | 7.69% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413288038 | C->T | INTERGENIC | None |