Detailed information of SNP:
|
SNP ID:
sf0413319760(Gbrowse)
Chromosome: chr04 Position: 13319760 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1386 | 95.74% | 4.26% |
| All Indica | 766 | 92.69% | 7.31% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 363 | 92.84% | 7.16% |
| Indica II | 200 | 95.00% | 5.00% |
| Indica Intermediate | 203 | 90.15% | 9.85% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413319760 | T->C | LOC_Os04g23340(LOC_Os04g23340.1) | Non-Synonymous SNP |