Detailed information of SNP:
|
SNP ID:
sf0413339216(Gbrowse)
Chromosome: chr04 Position: 13339216 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1260 | 97.62% | 2.38% |
| All Indica | 646 | 95.67% | 4.33% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 63 | 98.41% | 1.59% |
| Indica I | 281 | 93.95% | 6.05% |
| Indica II | 183 | 97.27% | 2.73% |
| Indica Intermediate | 182 | 96.70% | 3.30% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413339216 | A->C | LOC_Os04g23360(LOC_Os04g23360.1) | Non-Synonymous SNP |