Detailed information of SNP:
|
SNP ID:
sf0413373208(Gbrowse)
Chromosome: chr04 Position: 13373208 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 62.82% | 37.18% |
| All Indica | 794 | 80.35% | 19.65% |
| All Japonica | 497 | 29.18% | 70.82% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 372 | 71.51% | 28.49% |
| Indica II | 212 | 83.96% | 16.04% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413373208 | T->C | LOC_Os04g23400(LOC_Os04g23400.1) | Non-Synonymous SNP |