Detailed information of SNP:
|
SNP ID:
sf0413373609(Gbrowse)
Chromosome: chr04 Position: 13373609 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 80.66% | 19.34% |
| All Indica | 797 | 83.56% | 16.44% |
| All Japonica | 497 | 87.53% | 12.47% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 85.60% | 14.40% |
| Indica II | 211 | 70.62% | 29.38% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413373609 | A->G | LOC_Os04g23400(LOC_Os04g23400.1) | Non-Synonymous SNP |