Detailed information of SNP:
|
SNP ID:
sf0413376376(Gbrowse)
Chromosome: chr04 Position: 13376376 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 91.12% | 8.88% |
| All Indica | 797 | 90.97% | 9.03% |
| All Japonica | 489 | 91.62% | 8.38% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 84.80% | 15.20% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 333 | 98.50% | 1.50% |
| Tropical Japonica | 91 | 89.01% | 10.99% |
| Japonica Intermediate | 65 | 60.00% | 40.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413376376 | C->T | LOC_Os04g23410(LOC_Os04g23410.1) | Non-Synonymous SNP |