Detailed information of SNP:
|
SNP ID:
sf0413406501(Gbrowse)
Chromosome: chr04 Position: 13406501 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1307 | 75.36% | 24.64% |
| All Indica | 752 | 97.47% | 2.53% |
| All Japonica | 445 | 35.28% | 64.72% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 339 | 95.58% | 4.42% |
| Indica II | 209 | 98.56% | 1.44% |
| Indica Intermediate | 204 | 99.51% | 0.49% |
| Temperate Japonica | 310 | 16.13% | 83.87% |
| Tropical Japonica | 81 | 88.89% | 11.11% |
| Japonica Intermediate | 54 | 64.81% | 35.19% |
| Group VI/Aromatic | 11 | 54.55% | 45.45% |
| Intermediate | 34 | 76.47% | 23.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413406501 | A->G | LOC_Os04g23470(LOC_Os04g23470.1) | Non-Synonymous SNP |