Detailed information of SNP:
|
SNP ID:
sf0413408479(Gbrowse)
Chromosome: chr04 Position: 13408479 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 95.72% | 4.28% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 483 | 90.68% | 9.32% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 84 | 55.95% | 44.05% |
| Japonica Intermediate | 65 | 89.23% | 10.77% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413408479 | C->T | LOC_Os04g23470(LOC_Os04g23470.1) | Non-Synonymous SNP |