Detailed information of SNP:
|
SNP ID:
sf0413417183(Gbrowse)
Chromosome: chr04 Position: 13417183 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 91.35% | 8.65% |
| All Indica | 796 | 91.21% | 8.79% |
| All Japonica | 493 | 92.29% | 7.71% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 85.48% | 14.52% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 93 | 82.80% | 17.20% |
| Japonica Intermediate | 65 | 76.92% | 23.08% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413417183 | G->A | LOC_Os04g23490(LOC_Os04g23490.1) | INTRON |