Detailed information of SNP:
|
SNP ID:
sf0413417361(Gbrowse)
Chromosome: chr04 Position: 13417361 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 96.15% | 3.85% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 483 | 90.06% | 9.94% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 81 | 51.85% | 48.15% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0413417361 | C->T | LOC_Os04g23490(LOC_Os04g23490.1) | Non-Synonymous SNP |